Rhodydog

/Archive 1

I have sent you a note about a page you started

Hello, Rhodydog. Thank you for your work on Biochemical systems equation. User:SunDawn, while examining this page as a part of our page curation process, had the following comments:

Thank you for creating the article! Hopefully you will write more, have a blessed day!

To reply, leave a comment here and begin it with {{Re|SunDawn}}. Please remember to sign your reply with ~~~~. (Message delivered via the Page Curation tool, on behalf of the reviewer.)

✠ SunDawn ✠ (contact) 07:45, 28 January 2023 (UTC)

Thanks you for your note. I'd be happy to add more material. Rhodydog (talk) 21:15, 28 January 2023 (UTC)

Concern regarding Draft:Biochemical Circuit Design Patterns

Hello, Rhodydog. This is a bot-delivered message letting you know that Draft:Biochemical Circuit Design Patterns, a page you created, has not been edited in at least 5 months. Drafts that have not been edited for six months may be deleted, so if you wish to retain the page, please edit it again or request that it be moved to your userspace.

If the page has already been deleted, you can request it be undeleted so you can continue working on it.

Thank you for your submission to Wikipedia. FireflyBot (talk) 00:02, 22 March 2023 (UTC)

CS1 error on Draft:James A. Glazier

Hello, I'm Qwerfjkl (bot). I have automatically detected that this edit performed by you, on the page Draft:James A. Glazier, may have introduced referencing errors. They are as follows:

• A "missing periodical" error. References show this error when the name of the magazine or journal is not given. Please edit the article to add the name of the magazine/journal to the reference, or use a different citation template. (Fix | Ask for help)
• A "missing title" error. References show this error when they do not have a title. Please edit the article to add the appropriate title parameter to the reference. (Fix | Ask for help)

Please check this page and fix the errors highlighted. If you think this is a false positive, you can report it to my operator. Thanks, Qwerfjkl (bot) (talk) 00:39, 18 April 2023 (UTC)

CS1 error on Draft:James A. Glazier

Hello, I'm Qwerfjkl (bot). I have automatically detected that this edit performed by you, on the page Draft:James A. Glazier, may have introduced referencing errors. They are as follows:

• A "missing periodical" error. References show this error when the name of the magazine or journal is not given. Please edit the article to add the name of the magazine/journal to the reference, or use a different citation template. (Fix | Ask for help)

Please check this page and fix the errors highlighted. If you think this is a false positive, you can report it to my operator. Thanks, Qwerfjkl (bot) (talk) 01:11, 18 April 2023 (UTC)

Your draft article, Draft:Biochemical Circuit Design Patterns

Hello, Rhodydog. It has been over six months since you last edited the Articles for Creation submission or Draft page you started, "Biochemical Circuit Design Patterns".

In accordance with our policy that Wikipedia is not for the indefinite hosting of material deemed unsuitable for the encyclopedia mainspace, the draft has been deleted. When you plan on working on it further and you wish to retrieve it, you can request its undeletion. An administrator will, in most cases, restore the submission so you can continue to work on it.

Thanks for your submission to Wikipedia, and happy editing. Liz ^{Read! Talk!} 23:25, 19 April 2023 (UTC)

Concern regarding Draft:IBioSim

Hello, Rhodydog. This is a bot-delivered message letting you know that Draft:IBioSim, a page you created, has not been edited in at least 5 months. Drafts that have not been edited for six months may be deleted, so if you wish to retain the page, please edit it again or request that it be moved to your userspace.

If the page has already been deleted, you can request it be undeleted so you can continue working on it.

Thank you for your submission to Wikipedia. FireflyBot (talk) 07:01, 12 June 2023 (UTC)

Concern regarding Draft:PySB

Hello, Rhodydog. This is a bot-delivered message letting you know that Draft:PySB, a page you created, has not been edited in at least 5 months. Drafts that have not been edited for six months may be deleted, so if you wish to retain the page, please edit it again or request that it be moved to your userspace.

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Thank you for your submission to Wikipedia. FireflyBot (talk) 04:03, 22 June 2023 (UTC)

Concern regarding Draft:PySCeS

Hello, Rhodydog. This is a bot-delivered message letting you know that Draft:PySCeS, a page you created, has not been edited in at least 5 months. Drafts that have not been edited for six months may be deleted, so if you wish to retain the page, please edit it again or request that it be moved to your userspace.

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Thank you for your submission to Wikipedia. FireflyBot (talk) 18:02, 25 June 2023 (UTC)

Your draft article, Draft:IBioSim

Hello, Rhodydog. It has been over six months since you last edited the Articles for Creation submission or Draft page you started, "IBioSim".

In accordance with our policy that Wikipedia is not for the indefinite hosting of material deemed unsuitable for the encyclopedia mainspace, the draft has been deleted. When you plan on working on it further and you wish to retrieve it, you can request its undeletion. An administrator will, in most cases, restore the submission so you can continue to work on it.

Thanks for your submission to Wikipedia, and happy editing. Liz ^{Read! Talk!} 06:09, 10 July 2023 (UTC)

That’s ok, I decided it wouldn’t get past review hence I didn’t update it. Rhodydog (talk) 17:42, 10 July 2023 (UTC)

July 2023

Your edit to Reversible Hill Equation has been removed in whole or in part, as it appears to have added copyrighted material to Wikipedia without evidence of permission from the copyright holder. If you are the copyright holder, please read Wikipedia:Donating copyrighted materials for more information on uploading your material to Wikipedia. For legal reasons, Wikipedia cannot accept copyrighted material, including text or images from print publications or from other websites, without an appropriate and verifiable license. All such contributions will be deleted. You may use external websites or publications as a source of information, but not as a source of content, such as sentences or images—you must write using your own words. Wikipedia takes copyright very seriously, and persistent violators of our copyright policy will be blocked from editing. See Wikipedia:Copying text from other sources for more information. — Diannaa (talk) 18:49, 22 July 2023 (UTC)

I am the copyright owner of the image I added to the page. I created it using Affinity Designer.

I'd like to put it into the public domain but that problem is probably more complicated to do. I'll read the page you suggest to figure out how to claim copyright the image can be restored. Rhodydog (talk) 01:26, 24 July 2023 (UTC)

I read the instructions and did a release using the tool [generated using relgen] where I made the claim "am the creator and/or sole owner of the exclusive copyright of the media work" Is that sufficient? Rhodydog (talk) 01:38, 24 July 2023 (UTC)

? My message was about some prose I removed that was copied from https://vdocuments.site/cb-chapter3.html. I did not remove any images. — Diannaa (talk) 14:36, 24 July 2023 (UTC)

Ah yes that makes sense, that is actually my textbook and I own copyright to all the text since I self-publish. You wouldn't have known that. I can reword the text if you like. I assume I can just go back to the history to check what was removed and reedit. Rhodydog (talk) 21:27, 24 July 2023 (UTC)

Here is a link to the CopyPatrol report. Click on the iThenticate link to view what was found by the detection service. — Diannaa (talk) 12:44, 25 July 2023 (UTC)

I have updated the text as follows:

Match 1:

"if reversibility is removed as well the equation reduces to the simple irreversible Michaelis-Menten rate law. The equation can also revert to the product inhibited but irreversible rate law by setting the Keq to infinity. "

has been replaced with:

"If the enzyme is irreversible the equation turns into the simple Michaelis-Menten equation that is irreversible. When letting the equilibrium constant tend to infinity, the equation can be seen to revert to the simpler case where the product inhibits the reverse step."

Match 2:

"For an enzyme with $h$ (using the author's original notation) binding sites, the general form of the reversible Hill equation is given by:"

has been changed to:

"Using the author's own notation, if an enzyme has $h$ sites that can bind ligand, the form, in the general case, can be shown to be:"

Match 3:

"If h=1 the equation reduces to the non-cooperative reversible Michaelis-Menten equation."

has been changed to:

"The non-cooperative reversible Michaelis-Menten equation can be seen to emerge when we set the Hill coefficient to one."

Rhodydog (talk) 23:20, 28 July 2023 (UTC)

That looks ok from a copyright point of view. Thanks, — Diannaa (talk) 00:08, 29 July 2023 (UTC)

Disambiguation link notification for July 31

An automated process has detected that when you recently edited List of systems biology modeling software, you added a link pointing to the disambiguation page Maxima.

(Opt-out instructions.) --DPL bot (talk) 06:06, 31 July 2023 (UTC)

October 2023

Hi Rhodydog! I noticed that you recently marked an edit as minor that may not have been. "Minor edit" has a very specific definition on Wikipedia—it refers only to superficial edits that could never be the subject of a dispute, such as typo corrections or reverting obvious vandalism. Any edit that changes the meaning of an article is not a minor edit, even if it only concerns a single word. Please see Help:Minor edit for more information. Thank you. Kj cheetham (talk) 18:55, 3 October 2023 (UTC)

Thanks for spotting this, I probably was in auto mode and hit minor edit by mistake. Will

be more vigilant in future. Rhodydog (talk) 19:07, 3 October 2023 (UTC)

I have sent you a note about a page you started

Hello, Rhodydog. Thank you for your work on James A. Glazier. User:North8000, while examining this page as a part of our page curation process, had the following comments:

Nice work

To reply, leave a comment here and begin it with {{Re|North8000}}. Please remember to sign your reply with ~~~~. (Message delivered via the Page Curation tool, on behalf of the reviewer.)

North8000 (talk) 16:48, 11 October 2023 (UTC)

@North8000: I appreciate your support, I’m slowly getting the hang of what’s expected. Rhodydog (talk) 19:45, 11 October 2023 (UTC)

Draft:Draft:Reversible Michaelis-Menten kinetics

Hi, I putter around in drafts sometimes. Draft:Reversible Michaelis-Menten kinetics looks good and I expect it will promoted in due course, but because it's Fancy Science I think it needs a lede paragraph in "explain like I'm five" language. I don't dare attempt it but I find it helps to just couch stuff in very broad terms. "Reversible Michaelis-Menten kinetics are metabolic models using differential equations to study the biochemistry of enzymes." Etc. I have no idea if the foregoing makes a whit of sense just try to use big subject-level words if that makes sense, so someone clicking on the Wikipedia "random" button and landing on the page has some idea what planet they landed on. Thanks for contributing to Wikipedia!!! jengod (talk) 01:28, 27 October 2023 (UTC)

Thanks for the comment, what you say sounds very reasonable. I’ll see what I can do. Rhodydog (talk) 02:29, 27 October 2023 (UTC)

Just copying what I put it the edit summary: You are obviously an excellent teacher somewhere in the real world! I tweaked it a tiny bit (just for wiki style "ledes" as I understand it -- see Wikipedia:Manual of Style/Lead section) but I think this is valuable for both near-laypeople and advanced scholars. Of course revert or rework my changes see fit, and some other know-it-all will come along later and mess with it some other way LOL but I personally think we'd be lucky to have this article on Wikipedia. TY again. jengod (talk) 22:10, 27 October 2023 (UTC)

Looks good, thanks Rhodydog (talk) 22:27, 27 October 2023 (UTC)

Hello Rhodydog -- I took a look at this draft; is there a reason why you need to get an AfC review for it? It's very unlikely you will get anyone working there who can improve it at all. If you consider it finished, you could just move it to mainspace. Cheers, Espresso Addict (talk) 04:13, 29 October 2023 (UTC)

Thanks for the advice. I will do that. Rhodydog (talk) 04:30, 29 October 2023 (UTC)

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Ways to improve Linear biochemical pathway

Hello, Rhodydog,

Thank you for creating Linear biochemical pathway.

I have tagged the page as having some issues to fix, as a part of our page curation process and note that:

This page is too technical for the uninitiated reader.

The tags can be removed by you or another editor once the issues they mention are addressed. If you have questions, leave a comment here and begin it with {{Re|FormalDude}}. Remember to sign your reply with ~~~~. For broader editing help, please visit the Teahouse.

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––FormalDude (talk) 02:52, 2 December 2023 (UTC)

I can fix that. Rhodydog (talk) 04:06, 2 December 2023 (UTC)

Concern regarding Draft:Modeling Biochemical Cascades

Hello, Rhodydog. This is a bot-delivered message letting you know that Draft:Modeling Biochemical Cascades, a page you created, has not been edited in at least 5 months. Drafts that have not been edited for six months may be deleted, so if you wish to retain the page, please edit it again or request that it be moved to your userspace.

If the page has already been deleted, you can request it be undeleted so you can continue working on it.

Thank you for your submission to Wikipedia. FireflyBot (talk) 05:07, 2 January 2024 (UTC)

I have sent you a note about a page you started

Hello, Rhodydog. Thank you for your work on Reversible Michaelis–Menten kinetics. SunDawn, while examining this page as a part of our page curation process, had the following comments:

Hello my friend! Good day to you. Thanks for creating the article, I have marked it as reviewed. Have a blessed day!

To reply, leave a comment here and begin it with {{Re|SunDawn}}. Please remember to sign your reply with ~~~~. (Message delivered via the Page Curation tool, on behalf of the reviewer.)

✠ SunDawn ✠ (contact) 07:32, 15 January 2024 (UTC)

Your draft article, Draft:Catalog of MCA Control Patterns

Hello, Rhodydog. It has been over six months since you last edited the Articles for Creation submission or Draft page you started, "Catalog of MCA Control Patterns".

In accordance with our policy that Wikipedia is not for the indefinite hosting of material deemed unsuitable for the encyclopedia mainspace, the draft has been deleted. When you plan on working on it further and you wish to retrieve it, you can request its undeletion. An administrator will, in most cases, restore the submission so you can continue to work on it.

Thanks for your submission to Wikipedia, and happy editing. ✗plicit 08:12, 19 January 2024 (UTC)

Concern regarding Draft:Biochemical cascade (quantitative)

Hello, Rhodydog. This is a bot-delivered message letting you know that Draft:Biochemical cascade (quantitative), a page you created, has not been edited in at least 5 months. Drafts that have not been edited for six months may be deleted, so if you wish to retain the page, please edit it again or request that it be moved to your userspace.

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Thank you for your submission to Wikipedia. FireflyBot (talk) 02:05, 22 April 2024 (UTC)

Your submission at Articles for creation: Catalog of MCA Control Patterns has been accepted

Catalog of MCA Control Patterns, which you submitted to Articles for creation, has been created.

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🇺🇦 Fiddle^Timtrent Faddle^Talk to me 🇺🇦 15:55, 2 September 2024 (UTC)

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Enzyme kinetics

Hello Rhodydog. Each time I look at the Enzyme Kinetics article I am depressed and feel the best thing would be to scrap it completely and start again from the beginning. The problem with that is that I would end up trying to impose my own views, though I realize that there are still lots of people who like the Cleland approach, double-reciprocal plots, even rate-determining steps, etc., and I don't think I can (or should) do that. What do you think? I know from other things that you have written that your views are not 180° away from mine: am I right? Do you think that we just have to grit our teeth and leave the existing mess? Athel cb (talk) 17:55, 3 December 2024 (UTC)

Hi Athel cb, yes I agree. One approach is to slowly make the changes. For example, the use double-reciprocal plots is a good example. Also you're no imposing your own views if there are sources to back up the claim. Perhaps start with double-reciprocal plots and once that is settled move to the next rough patch. You could also relegate the old material to a section on historical interest and point to the 'new' more 'modern' approaches. If you want to do this let me know. Rhodydog (talk) 23:12, 3 December 2024 (UTC)