Enzyme
|
PDB code
|
Source
|
Recognition sequence
|
Cut
|
Isoschizomers
|
CacI
|
|
Clostridium acetobutylicum N1-4081
|
5' GATC 3' CTAG
|
5' --- GATC--- 3' 3' ---CTAG --- 5'
|
|
Cac8I
|
|
Clostridium acetobutylicum ABKn8
|
5' GCNNGC 3' CGNNCG
|
5' ---GCN NGC--- 3' 3' ---CGN NCG--- 5'
|
|
CaiI
|
|
Comamonas acidovarans Iti19-021
|
5' CAGNNNCTG 3' GTCNNNGAC
|
5' ---CAGNNN CTG--- 3' 3' ---GTC NNNGAC--- 5'
|
AlwNI
|
CauI
|
|
Chloroflexus aurantiacus
|
5' GGWCC 3' CCWGG
|
5' ---G GWCC--- 3' 3' ---CCWG G--- 5'
|
BamNxI, BcuAI, BsrAI, Eco47I, FspMSI, HgiCII, HgiJI, SmuEI
|
CauII
|
|
Chloroflexus aurantiacus
|
5' CCSGG 3' GGSCC
|
5' ---CC SGG--- 3' 3' ---GGS CC--- 5'
|
AhaI, AseII, AsuC2I, BcnI, Eco1831I, EcoHI, Kpn49kII, NciI
|
CauB3I
|
|
Chloroflexus aurantiacus B3
|
5' TCCGGA 3' AGGCCT
|
5' ---T CCGGA--- 3' 3' ---AGGCC T--- 5'
|
Aor13HI, BbvAIII, BseAI, BspEI, BspMII, Kpn2I, MroI, PtaI
|
CbiI
|
|
Clostridium bifermentans B-4
|
5' TTCGAA 3' AAGCTT
|
5' ---TT CGAA--- 3' 3' ---AAGC TT--- 5'
|
Asp10HI, Bim19I, BsiCI, BspT104I, Csp45I, LspI, NspV, SspRFI
|
CboI
|
|
Clostridium botulinum
|
5' CCGG 3' GGCC
|
5' ---C CGG--- 3' 3' ---GGC C--- 5'
|
|
CbrI
|
|
Citrobacter braakii 1146
|
5' CCWGG 3' GGWCC
|
5' ---CC WGG--- 3' 3' ---GGW CC--- 5'
|
AorI, BseBI, Bse24I, BstNI, BstOI, Bst2UI, BthDI, EcoRII, MvaI
|
CciNI
|
|
Curtobacterium citreus
|
5' GCGGCCGC 3' CGCCGGCG
|
5' ---GC GGCCGC--- 3' 3' ---CGCCGG CG--- 5'
|
|
CcoI
|
|
Clostridium coccoides B-2
|
5' GCCGGC 3' CGGCCG
|
5' ---GCC GGC--- 3' 3' ---CGG CCG--- 5'
|
|
CcrI
|
|
Caulobacter crescentus CB-13
|
5' CTCGAG 3' GAGCTC
|
5' ---C TCGAG--- 3' 3' ---GAGCT C--- 5'
|
|
CcuI
|
|
Chroococcidiopsis cubana
|
5' GGNCC 3' CCNGG
|
5' ---G GNCC--- 3' 3' ---CCNG G--- 5'
|
AsuI, Bal228I, BavBII, BsiZI, BspF4I, Cfr13I, Nsp7121I, PspPI
|
CcyI
|
|
Clostridium cylindrosporum
|
5' GATC 3' CTAG
|
5' --- GATC--- 3' 3' ---CTAG --- 5'
|
BfuCI, Bsp67I, Bst19II, CviAI, FnuCI, MboI, NmeCI, SauMI
|
CdiI
|
|
Citrobacter freundii RFL2
|
5' CATCG 3' GTAGC
|
5' ---CATC G--- 3' 3' ---GTAG C--- 5'
|
|
CelI
|
|
Citrobacter freundii RFL6
|
5' GGATCC 3' CCTAGG
|
5' ---G GATCC--- 3' 3' ---CCTAG G--- 5'
|
AliI, ApaCI, AsiI, BamHI, CelI, NspSAIV, RspLKII, SolI, Uba4009I
|
CelII
|
|
Coccochloris elabens 17a
|
5' GCTNAGC 3' CGANTCG
|
5' ---GC TNAGC--- 3' 3' ---CGANT CG--- 5'
|
|
CeqI
|
|
Corynebacterium equi
|
5' GATATC 3' CTATAG
|
5' ---GAT ATC--- 3' 3' ---CTA TAG--- 5'
|
|
CflI
|
|
Cellulomonas flavigena
|
5' CTGCAG 3' GACGTC
|
5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5'
|
AjoI, BloHII, CflI, CstI, Ecl37kI, PaePI, PstI, SalPI, Srl5DI, Sst12I
|
CfoI
|
|
Clostridium formicoaceticum
|
5' GCGC 3' CGCG
|
5' ---GCG C--- 3' 3' ---C GCG--- 5'
|
AspLEI, BspLAI, BstHHI, FnuDIII, HhaI, HinP1I, HsoI, HspAI, SciNI
|
CfrI
|
|
Citrobacter freundii RFL2
|
5' YGGCCR 3' RCCGGY
|
5' ---Y GGCCR--- 3' 3' ---RCCGG Y--- 5'
|
|
Cfr6I
|
|
Citrobacter freundii RFL6
|
5' CAGCTG 3' GTCGAC
|
5' ---CAG CTG--- 3' 3' ---GTC GAC--- 5'
|
|
Cfr9I
|
|
Citrobacter freundii
|
5' CCCGGG 3' GGGCCC
|
5' ---C CCGGG--- 3' 3' ---GGGCC C--- 5'
|
AhyI, EaeAI, EclRI, Pac25I, PspAI, TspMI, XcyI, XmaI, XmaCI
|
Cfr10I[7][8]
|
1CFR
|
Citrobacter freundii RFL10
|
5' RCCGGY 3' YGGCCR
|
5' ---R CCGGY--- 3' 3' ---YGGCC R--- 5'
|
|
Cfr13I
|
|
Citrobacter freundii RFL13
|
5' GGNCC 3' CCNGG
|
5' ---G GNCC--- 3' 3' ---CCNG G--- 5'
|
AsuI, Bal228I, BavBII, BsiZI, BspF4I, FmuI, Nsp7121I, PspPI
|
Cfr42I
|
|
Citrobacter freundii RFL42
|
5' CCGCGG 3' GGCGCC
|
5' ---CCGC GG--- 3' 3' ---GG CGCC--- 5'
|
SacII, CscI, HgaI
|
CfrA4I
|
|
Citrobacter freundii A4
|
5' CTGCAG 3' GACGTC
|
5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5'
|
AjoI, BloHII, CflI, CstI, Ecl2zI, PaePI, PstI, SalPI, Srl5DI, Sst12I
|
CfrBI
|
|
Citrobacter freundii 4111
|
5' CCWWGG 3' GGWWCC
|
5' ---C CWWGG--- 3' 3' ---GGWWC C--- 5'
|
|
CfrJ4I
|
|
Citrobacter freundii J4
|
5' CCCGGG 3' GGGCCC
|
5' ---CCC GGG--- 3' 3' ---GGG CCC--- 5'
|
AhyI, CfrJ4I, EaeAI, EclRI, Pac25I, SmaI, TspMI, XcyI, XmaI
|
CfuI
|
|
Caulobacter fusiformis BC-25
|
5' GATC 3' CTAG
|
5' ---GA TC--- 3' 3' ---CT AG--- 5'
|
|
CfuII
|
|
Caulobacter fusiformis BC-25
|
5' CTGCAG 3' GACGTC
|
5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5'
|
AjoI, AliAJI, CfuII, HalII, PaePI, Psp23I, PstI, SalPI, Srl5DI, YenI
|
ChaI
|
|
Corynebacterium halofytica
|
5' GATC 3' CTAG
|
5' ---GATC --- 3' 3' --- CTAG--- 5'
|
BfuCI, Bsp2095I, BspKT6I BtkII, FnuCI, MboI, NmeCI, SsiAI
|
CjeI
|
|
Campylobacter jejuni P37
|
5' CCAN6GT 3' GGTN6CA
|
5' ---CCAN6GTN8NNNNNNN --- 3' 3' ---GGTN6CAN8N NNNNNN--- 5'
|
— None on May 2010 —
|
CjePI
|
|
Campylobacter jejuni P116
|
5' CCAN7TC 3' GGTN7AG
|
5' ---CCAN7TCN7NNNNNNN --- 3' 3' ---GGTN7AGN7N NNNNNN--- 5'
|
— None on May 2010 —
|
ClaI
|
|
Caryophanon latum L
|
5' ATCGAT 3' TAGCTA
|
5' ---AT CGAT--- 3' 3' ---TAGC TA--- 5'
|
AagI, BanIII, BavCI, Bsa29I, BseCI, BspDI, Bsu15I, BsuTUI
|
CltI
|
|
Caryophanon latum
|
5' GGCC 3' CCGG
|
5' ---GG CC--- 3' 3' ---CC GG--- 5'
|
|
CpfI
|
|
Clostridium perfringens
|
5' GATC 3' CTAG
|
5' --- GATC--- 3' 3' ---CTAG --- 5'
|
AspMDI, Bsp67I, Bst19II, CcyI, FnuCI, MboI, NphI, SauMI
|
CpoI
|
|
Caseobacter polymorphus
|
5' CGGWCCG 3' GCCWGGC
|
5' ---CG GWCCG--- 3' 3' ---GCCWG GC--- 5'
|
|
CscI
|
|
Calothrix scopulorum
|
5' CCGCGG 3' GGCGCC
|
5' ---CCGC GG--- 3' 3' ---GG CGCC--- 5'
|
Cfr42I, SacII, HgaI
|
CsiAI
|
|
Corynebacterium sp. A
|
5' ACCGGT 3' TGGCCA
|
5' ---A CCGGT--- 3' 3' ---TGGCC A--- 5'
|
AgeI, AsiAI,
|
AsiGI,
|
BshTI
|
CspAI, PinAI
|
|
CsiBI
|
|
Corynebacterium sp. B
|
5' GCGGCCGC 3' CGCCGGCG
|
5' ---GC GGCCGC--- 3' 3' ---CGCCGG CG--- 5'
|
|
CspI
|
|
Corynebacterium sp.
|
5' CGGWCCG 3' GCCWGGC
|
5' ---CG GWCCG--- 3' 3' ---GCCWG GC--- 5'
|
|
Csp6I
|
|
Corynebacterium sp. RFL6
|
5' GTAC 3' CATG
|
5' ---G TAC--- 3' 3' ---CAT G--- 5'
|
AfaI, CviQI, CviRII, HpyBI, PabI, PlaAII, RsaI, RsaNI,
|
Csp45I
|
|
Clostridium sporogenes
|
5' TTCGAA 3' AAGCTT
|
5' ---TT CGAA--- 3' 3' ---AAGC TT--- 5'
|
Asp10HI, Bim19I, BsiCI, BspT104I, FspII, LspI, NspV, SspRFI
|
CspAI
|
|
Corynebacterium sp. 301
|
5' ACCGGT 3' TGGCCA
|
5' ---A CCGGT--- 3' 3' ---TGGCC A--- 5'
|
AgeI, AsiAI,
|
AsiGI,
|
BshTI
|
CsiAI, PinAI
|
|
CspBI
|
|
Corynebacterium sp. B
|
5' GCGGCCGC 3' CGCCGGCG
|
5' ---GC GGCCGC--- 3' 3' ---CGCCGG CG--- 5'
|
|
CspCI
|
|
Citrobacter sp. 2144
|
5' CAAN4NGTGG 3' GTTN4NCACC
|
5' ---CAAN5GTGGN8NNNN --- 3' 3' ---GTTN5CACCN8NN NN--- 5'
|
— None on May 2010 —
|
Csp68KI
|
|
Cyanothece sp. BH68K
|
5' GGWCC 3' CCWGG
|
5' ---G GWCC--- 3' 3' ---CCWG G--- 5'
|
BamNxI, BcuAI, BsrAI, Eco47I, FspMSI, HgiCII, Kzo49I, SmuEI
|
Csp68KII
|
|
Cyanothece sp. BH68K
|
5' TTCGAA 3' AAGCTT
|
5' ---TT CGAA--- 3' 3' ---AAGC TT--- 5'
|
Asp10HI, Bim19I, BsiCI, BstBI, Csp45I, LspI, PlaII, SviI
|
Csp68KIII
|
|
Cyanothece sp. BH68K
|
5' ATGCAT 3' TACGTA
|
5' ---ATGCA T--- 3' 3' ---T ACGTA--- 5'
|
BfrBI, EcoT22I, Mph1103I, NsiI, PinBI, Ppu10I, SspD5II, Zsp2I
|
Csp68KVI
|
|
Cyanothece sp. BH68K
|
5' CGCG 3' GCGC
|
5' ---CG CG--- 3' 3' ---GC GC--- 5'
|
BepI, Bpu95I, Bsp123I, BstFNI, BstUI, BtkI, FalII, SelI, ThaI
|
CspKVI
|
|
Cyanothece sp. BH68K
|
5' CGCG 3' GCGC
|
5' ---CG CG--- 3' 3' ---GC GC--- 5'
|
|
CstI
|
|
Clostridium sticklandii
|
5' CTGCAG 3' GACGTC
|
5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5'
|
AjoI, AliAJI, CfrA4I, HalII, MhaAI, Pfl21I, PstI, SflI, Srl5DI, YenI
|
CstMI
|
|
Corynebacterium striatum M82B
|
5' AAGGAG 3' TTCCTC
|
5' ---AAGGAGN17NNN --- 3' 3' ---TTCCTCN17N NN--- 5'
|
— None on May 2010 —
|
CthII
|
|
Clostridium thermocellum
|
5' CCWGG 3' GGWCC
|
5' ---CC WGG--- 3' 3' ---GGW CC--- 5'
|
ApaORI, BseBI, Bse24I, Bst2UI, BstNI, BstM6I, EcoRII, MvaI
|
CviAI
|
|
Chlorella NC64A (PBCV-1)
|
5' GATC 3' CTAG
|
5' --- GATC--- 3' 3' ---CTAG --- 5'
|
Bme12I, Bsp67I, Bst19II, CcyI, FnuCI, MgoI, NphI, SauMI
|
CviAII
|
|
Chlorella NC64A (PBCV-1)
|
5' CATG 3' GTAC
|
5' ---C ATG--- 3' 3' ---GTA C--- 5'
|
|
CviBI
|
|
Chlorella NC64A (NC-1A)
|
5' GANTC 3' CTNAG
|
5' ---G ANTC--- 3' 3' ---CTNA G--- 5'
|
|
CviJI
|
|
Chlorella NC64A (IL-3A)
|
5' RGCY 3' YCGR
|
5' ---RG CY--- 3' 3' ---YC GR--- 5'
|
|
CviQI
|
|
Chlorella NC64A (NY-2A)
|
5' GTAC 3' CATG
|
5' ---G TAC--- 3' 3' ---CAT G--- 5'
|
AfaI, Csp6I, CviRII, HpyBI, PabI, PlaAII, RsaI, RsaNI,
|
CviRI
|
|
Chlorella NC64A (XZ-6E)
|
5' TGCA 3' ACGT
|
5' ---TG CA--- 3' 3' ---AC GT--- 5'
|
|
CviRII
|
|
Chlorella NC64A (XZ-6E)
|
5' GTAC 3' CATG
|
5' ---G TAC--- 3' 3' ---CAT G--- 5'
|
AfaI, Csp6I, CviQI, HpyBI, PabI, PlaAII, RsaI, RsaNI,
|
CviTI
|
|
Chlorella NC64A (CA-1A)
|
5' RGCY 3' YCGR
|
5' ---RG CY--- 3' 3' ---YC GR--- 5'
|
|
CvnI
|
|
Chromatium vinosum
|
5' CCTNAGG 3' GGANTCC
|
5' ---CC TNAGG--- 3' 3' ---GGANT CC--- 5'
|
AocI, AxyI, Bse21I, Bsu36I, Eco81I, MstII, SauI, SshAI
|