Talk:Β-Hydroxy β-methylbutyric acid/GA1
GA Review
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Reviewer: Tom (LT) (talk · contribs) 05:47, 28 November 2017 (UTC)
Out of sympathy for poor Seppi333 I will take up this review. I'll spend a few days familiarising myself with the subject matter and then post my review. --Tom (LT) (talk) 05:47, 28 November 2017 (UTC)
- Thank you very much! – I really appreciate it Tom!! Seppi333 (Insert 2¢) 19:10, 28 November 2017 (UTC)
- I forgot to mention, a lot of the paywalled reviews that are cited in this article can be viewed here: [1]. The file names for those papers reflect the reference names that are used in the article source (i.e.,
<ref name="xyz">
→ xyz.pdf). Seppi333 (Insert 2¢) 21:44, 28 November 2017 (UTC)- As a note, I am reviewing this article here [2]. If this situation happens again, please ping me and I will review the article based on any changes in the interests of time. Also happy when this passes to participate at the FA if that helps. --Tom (LT) (talk) 07:37, 1 December 2017 (UTC)
- Have made my first-pass review (and updated the table below). Will go through your replies and mark what has been addressed, and then when this is complete go through the article a second time and briefly as a second check. As stated above am happy to discuss anything below. --Tom (LT) (talk) 22:55, 8 December 2017 (UTC)
- As a note, I am reviewing this article here [2]. If this situation happens again, please ping me and I will review the article based on any changes in the interests of time. Also happy when this passes to participate at the FA if that helps. --Tom (LT) (talk) 07:37, 1 December 2017 (UTC)
Assessment
editRate | Attribute | Review Comment |
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1. Well-written: | ||
1a. the prose is clear, concise, and understandable to an appropriately broad audience; spelling and grammar are correct. | ||
1b. it complies with the Manual of Style guidelines for lead sections, layout, words to watch, fiction, and list incorporation. | ||
2. Verifiable with no original research: | ||
2a. it contains a list of all references (sources of information), presented in accordance with the layout style guideline. | ||
2b. reliable sources are cited inline. All content that could reasonably be challenged, except for plot summaries and that which summarizes cited content elsewhere in the article, must be cited no later than the end of the paragraph (or line if the content is not in prose). | ||
2c. it contains no original research. | All statements references | |
2d. it contains no copyright violations or plagiarism. | None identified | |
3. Broad in its coverage: | ||
3a. it addresses the main aspects of the topic. | ||
3b. it stays focused on the topic without going into unnecessary detail (see summary style). | ||
4. Neutral: it represents viewpoints fairly and without editorial bias, giving due weight to each. | Nil issues | |
5. Stable: it does not change significantly from day to day because of an ongoing edit war or content dispute. | ||
6. Illustrated, if possible, by media such as images, video, or audio: | ||
6a. media are tagged with their copyright statuses, and valid non-free use rationales are provided for non-free content. | ||
6b. media are relevant to the topic, and have suitable captions. | ||
7. Overall assessment. |
Discussion
edit- All right, Seppi333, I will be honest here. It's clear you've put a lot of work into this article and I'm sure published in a medical journal this would be an excellent review. However, it's published here on WP and is being reviewed for "GA status" which is a different kettle of fish.
- Firstly though, even more confusingly for me as a reviewer:
- (a) I can't seem to find a past GA review to compare my reviews against; and
- (b) given this has been to FA a number of times I think it will be very frustrating if I provide all sorts of specific advice to you which then needs to be rechanged in accordance with the FA reviewers' opinions; and
- (c) some of the issues I raise are probably in response to the concerns of others.
- That said, I've reviewed probably more than 80 articles, including some complex ones, so I think I have a fair idea of how to interpret GA criteria. So, here goes:
- In general, I find this article very hard to read. I find this difficult for a few reasons. There are a lot of references everywhere, and a lot of wikilinks. The language is very technical. I find some of the paragraphs could be arranged in a better way. A lot of facts are presented at once without much synthesis. Systematic reviews are placed beside primary sources. Language used to describe similar issues is inconsistent. Also in some areas extraneous information provided that could be cut to make things easier to read.
- Now, taking into account (a)-(c), I'm not quite sure what to do. I can pass this article given there doesn't seem to be many others who have commented about the readability of the article in past FA reviewers, and let FA reviewers nut out the details. I could ask for a second reviewer (not inclined to do this). I could provide specific advice which is likely to be fairly subjective. What do you think/want, Seppi333? --Tom (LT) (talk) 23:06, 2 December 2017 (UTC)
- @Tom (LT): I'd prefer your specific advice on how to improve the readability (alternatively, feel free to make any changes you see fit it if you feel comfortable with it). If we end up rewriting the entire article in the process, that's fine with me as long as there's an improvement. Anyway, this is the first GA review for this article since I initially decided to skip the GA process and go straight to FAC. Seppi333 (Insert 2¢) 00:29, 3 December 2017 (UTC)
- OK, here goes then:--Tom (LT) (talk) 22:30, 3 December 2017 (UTC)
@Tom (LT): I finished going through the points below. I just need your feedback on my responses about some of the statements in the medical and pharmacodynamics sections in order to proceed with addressing those issues. Seppi333 (Insert 2¢) 23:12, 21 December 2017 (UTC)
Review of text
editHappy to discuss any of the below. These suggestions are not intended to be prescriptive & only intended to illustrate my concerns about the 'well-written' point. They don't all need to be addressed for the review to pass. Hope it is helpful. --Tom (LT) (talk) 22:59, 3 December 2017 (UTC)
- I'll address these issues as time permits. I'm not addressing these points in any systematic order, so it might appear that I've ignored some of them until I get to them. Seppi333 (Insert 2¢) 20:24, 4 December 2017 (UTC)
Lead
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@Tom (LT): Re: The lead references – Do you want me to use the same referencing style that was used in the lead of amphetamine? Seppi333 (Insert 2¢) 20:51, 4 December 2017 (UTC)
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Uses
editMedical
edit- Does this article ("Elderly persons with ICU-acquired weakness: the potential role for β-hydroxy-β-methylbutyrate (HMB) supplementation") really comment on HIV immune function? (it is used here "Clinical trials with Juven for AIDS")
- Yes. From [3]:
In patients with human immunodeficiency virus (HIV), Clark et al46 have demonstrated that HMB supplementation in addition to arginine and glutamine not only increased lean body mass by 2.6 kg but also increased CD3, CD4, and CD5 cell counts.
As noted above, the full-text of paywalled citations in this article can be accessed via this link: [4]. The file names of the pdf files are the same as the reference names that are used in the article source (i.e.,<ref name="xyz">
→ xyz.pdf). Seppi333 (Insert 2¢) 05:30, 8 December 2017 (UTC)- Right. This study is just referencing another primary source. I strongly advocate we remove this. I don't think it's responsible to insert a statement like this without a stronger source. --Tom (LT) (talk) 22:00, 12 December 2017 (UTC)
- I'm confused. PMID 24072740 is marked as a review on Pubmed; the quote from above is just a summary of 1 of the primary sources it reviewed. I can check whether or not that primary source is covered in one of the other medical reviews I've cited if that's what you're asking about though. Seppi333 (Insert 2¢) 22:48, 12 December 2017 (UTC)
- The source that this statement is derived from is a primary source. I really don't think we should be including something like this, which is a medical claim unless there is a stronger source (WP:MEDRS). It is in my mind misleading to state that HMB has a role in HIV/AIDS management without stronger evidence. --Tom (LT) (talk) 02:36, 15 December 2017 (UTC)
- I'm confused. PMID 24072740 is marked as a review on Pubmed; the quote from above is just a summary of 1 of the primary sources it reviewed. I can check whether or not that primary source is covered in one of the other medical reviews I've cited if that's what you're asking about though. Seppi333 (Insert 2¢) 22:48, 12 December 2017 (UTC)
- Right. This study is just referencing another primary source. I strongly advocate we remove this. I don't think it's responsible to insert a statement like this without a stronger source. --Tom (LT) (talk) 22:00, 12 December 2017 (UTC)
- Yes. From [3]:
- Like I was saying before, that statement is cited and supported by PMID 24057808 and PMID 24072740, both of which are classified as a medical reviews on Pubmed (follow the PMID links and click/expand the tab titled "Publication type, MeSH terms, Substances" – doing this will display "Publication type: Review"). The quoted sentence above in my initial reply to this bullet – "
In patients with human immunodeficiency virus (HIV), Clark et al46 have demonstrated that HMB supplementation in addition to arginine and glutamine not only increased lean body mass by 2.6 kg but also increased CD3, CD4, and CD5 cell counts
" – is from the 2nd review that I've listed (i.e., PMID 24072740), not the primary source it was reviewing. In other words, that statement isn't cited or supported by a primary source; rather, it's cited and supported by 2 medical reviews which covered the findings of PMID 10850936, which is a primary source that you seem to be confusing the review with. That primary source is not currently and has never been cited in this article. In any event, if you'd prefer that I use a newer review instead, I can cite a medical review from 2017 (PMID 28493406 - see Table 6 from this review) which includes 2 clinical trials with HMB for AIDS. On a slightly tangential note, HMB is currently included in medical foods that are used to provide nutritional support in individuals with AIDS/HIV (NB: medical foods are intended to be taken under medical supervision in the United States – see pages 3–6 of this FDA guidance document for further information on their regulatory/labeling requirements). Seppi333 (Insert 2¢) 01:03, 16 December 2017 (UTC) - @Tom (LT): Sorry, it just occurred to me that you seem to be taking issue with covering the findings from reviews that included that particular clinical trial in the article, not the reviews themselves. If I'm correct about that being the issue here, then when you say "a stronger source", do you mean we should wait until a 2nd clinical trial that examines those parameters is published and subsequently reviewed? Right now, there's 3 reviews that cover 2 clinical trials of HMB for AIDS, but only 1 of those trials examined CD3 and CD8 counts. In the event you'd like to read about what clinical parameters the 2nd trial examined, this is a link to its full text:
{{DOI|10.1177/014860710402800265}}
. If you can clarify what the issue is, I'd appreciate it, since I'm not sure if you're asking for a replacement review of that trial (re: my previous reply) or a review of a corroborating trial/primary source (re: this reply). Seppi333 (Insert 2¢) 01:21, 16 December 2017 (UTC)- The two issues are: the sentence states "Clinical trials with Juven for AIDS have also demonstrated improvements in immune status, as measured by a reduced HIV viral load relative to controls and higher CD3+ and CD8+ cell counts". (a) Here it states "trialS" yet there as you say there is only one trial showing reduced HIV viral load. (b) given that there is only one trial, it really is just included, not supported, by the reviews. I would be happy if this was rephrased in a more general way, or if the second clause was removed. --Tom (LT) (talk) 01:23, 19 December 2017 (UTC)
- I've changed the plural to singular to accurately reflect this (diff). I don't think it would be wise to delete this sentence. While these findings are from 1 study which was included in these reviews, these endpoints were specifically mentioned in the text of the review articles despite not being the primary endpoint (which was a change in lean mass) in the study itself. I.e., the authors probably discussed these secondary endpoints because they are notable in their own right. In any event, what phrasing did you have it mind for this sentence? Seppi333 (Insert 2¢) 01:26, 20 December 2017 (UTC)
- The two issues are: the sentence states "Clinical trials with Juven for AIDS have also demonstrated improvements in immune status, as measured by a reduced HIV viral load relative to controls and higher CD3+ and CD8+ cell counts". (a) Here it states "trialS" yet there as you say there is only one trial showing reduced HIV viral load. (b) given that there is only one trial, it really is just included, not supported, by the reviews. I would be happy if this was rephrased in a more general way, or if the second clause was removed. --Tom (LT) (talk) 01:23, 19 December 2017 (UTC)
- "The efficacy of Juven for the treatment of cancer cachexia was also examined in a phase 3 clinical trial which found a strong trend (i.e., p=.08) for an improvement in lean body mass relative to controls;[14][30][33] however, according to the authors of the trial itself and a systematic review that included it, the trial did not adequately test the ability of Juven to prevent or reverse the loss of lean body mass in individuals with cancer cachexia since the majority of participants did not complete the study" I do not believe a phase 3 study meets WP:MEDRS. Surely it is a primary source. You then even include criticism by a systematic review. Should this be included at all?
The assertion which was made in the systematic review about the clinical trial is identical to the assertion made by the authors of clinical trial publication. In other words, the clinical trial source and systematic review draw the same conclusion about the clinical trial. I'll remove that primary source if you think it detracts from the article; I only added it because I thought it helped to show consensus. Seppi333 (Insert 2¢) 05:30, 8 December 2017 (UTC)Removed + rephrased sentence- I think that, guided by our local policy WP:MEDRS, we treat the secondary source as having more weight and should remove the primary phase three trial. --Tom (LT) (talk) 22:00, 12 December 2017 (UTC)
- Sorry, I should've clarified that the thing I removed earlier was that primary source - it's no longer cited in the article (diff of removal). I rephrased the sentence after I removed it because the sentence stated something along the lines of: "the authors of the trial and a systematic review that included it stated..." Seppi333 (Insert 2¢) 22:48, 12 December 2017 (UTC)
- Thanks. The line at issue is still present? "The efficacy of Juven for the treatment of cancer cachexia was also examined in a phase 3 clinical trial which found a strong trend (i.e., p=.08) for an improvement in lean body mass relative to controls" --Tom (LT) (talk) 23:31, 17 December 2017 (UTC)
- What's wrong with that sentence? Seppi333 (Insert 2¢) 01:07, 20 December 2017 (UTC)
- Thanks. The line at issue is still present? "The efficacy of Juven for the treatment of cancer cachexia was also examined in a phase 3 clinical trial which found a strong trend (i.e., p=.08) for an improvement in lean body mass relative to controls" --Tom (LT) (talk) 23:31, 17 December 2017 (UTC)
- Sorry, I should've clarified that the thing I removed earlier was that primary source - it's no longer cited in the article (diff of removal). I rephrased the sentence after I removed it because the sentence stated something along the lines of: "the authors of the trial and a systematic review that included it stated..." Seppi333 (Insert 2¢) 22:48, 12 December 2017 (UTC)
- NB: The only reason I've included any primary medical sources in this article is to support existing medical reviews or to supplement medical reviews which don't cover specific details that are only covered in the primary source. E.g., the specific mechanisms of action that give rise to HMB's mode of action aren't covered in most medical reviews, and those that do mention mechanisms of action gloss over the details; in contrast, HMB's mode of action (increased protein biosynthesis and reduced protein catabolism) is covered in almost every medical review about the compound. Seppi333 (Insert 2¢) 05:30, 8 December 2017 (UTC)
- I think that, guided by our local policy WP:MEDRS, we treat the secondary source as having more weight and should remove the primary phase three trial. --Tom (LT) (talk) 22:00, 12 December 2017 (UTC)
Addressed
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Side-effects
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References
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Pharmacology
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Chemistry
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The comment below pertains to the discussion at FAC
References
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History
edit- No comments, easy to understand and fairly interesting
In general
edit- Excellent article you have clearly put a lot of effort into
- Too many references - (1) should be trimmed if at all possible, especially when single facts have multiple references; (2) lead seems to have more references than the body for some things, this should surely be reversed
- Thank you, I can see you've tried to trim the references and appreciate this. --Tom (LT) (talk) 22:26, 25 December 2017 (UTC)
- Some language used in the article is quite technical and could be simplified to enhance readability
- Suggest you quickly run through the article and standardise all spellings of HMB to the acronym HMB and HMB-FA, as currently they alternate making this quite difficult to read at times
- The only place in the article (as of today) where the expanded/full term was used, but the acronym could be used instead, was in the history section; I've updated that section accordingly (diff). The use of HMB-Ca and HMB-FA and the remaining uses of the expanded/full terms are in places where using the acronym "HMB" would not be appropriate since the text is referring specifically to one commercial formulation, the conjugate acid, or the conjugate base in those contexts. "HMB" refers to all of those collectively. Seppi333 (Insert 2¢) 07:18, 20 December 2017 (UTC)
- Edit: after reconsideration, I decided to standardize HMB-Ca and HMB-FA to HMB in the side effects section as well since the difference in the dose of HMB between HMB-Ca and HMB-FA is pretty small (diff). Almost all clinical studies used 3 g of either formulation anyway. Seppi333 (Insert 2¢) 23:34, 21 December 2017 (UTC)
- Thanks. The article's readability has improved (in my eyes at least) throughout the review.
- Edit: after reconsideration, I decided to standardize HMB-Ca and HMB-FA to HMB in the side effects section as well since the difference in the dose of HMB between HMB-Ca and HMB-FA is pretty small (diff). Almost all clinical studies used 3 g of either formulation anyway. Seppi333 (Insert 2¢) 23:34, 21 December 2017 (UTC)
- The only place in the article (as of today) where the expanded/full term was used, but the acronym could be used instead, was in the history section; I've updated that section accordingly (diff). The use of HMB-Ca and HMB-FA and the remaining uses of the expanded/full terms are in places where using the acronym "HMB" would not be appropriate since the text is referring specifically to one commercial formulation, the conjugate acid, or the conjugate base in those contexts. "HMB" refers to all of those collectively. Seppi333 (Insert 2¢) 07:18, 20 December 2017 (UTC)
- Suggest you quickly run through the article and standardise all spellings of HMB to the acronym HMB and HMB-FA, as currently they alternate making this quite difficult to read at times
- Images are excellent
- Won't delve in to the sources used that much other than to say for posterity's sake that they will need a closer look in FA several of them are primary sources and small scale studies
I hope this review helps. Will start working through your replies in the next day or so. Cheers --Tom (LT) (talk) 22:50, 8 December 2017 (UTC)
@Tom (LT): I combed through the references and compiled the list below that includes every primary source cited in the article which has a PMID number (the handful of other primary sources cite statements in chemistry, history, etc., so they're all covered by WP:RS).
Primary sources with a PMID # that were cited in this article – the sections in the body where these are cited are listed in parentheses:
PMID 18293016 – included in medical section, but doesn't support a medical claim - only comments on the adequancy of the studyRemoved
- PMID 24495238 – supports statements about concentrations in bovine milk and food fortification with HMB (
Available forms,Detection in body fluids) - PMID 26271627 – supports statements about presence in human milk and its concentration range (Detection in body fluids)
- PMID 26373270 – support its commercial availability and statements about its pharmacokinetics (Available uses, Pharmacokinetics)
- PMID 21918059 – support statements about its metabolic pathway (Biosynthesis)
- PMID 19211028 – supports which protein kinases, myogenic factors, or transcription factors mediate the effects that were identified in reviews of in vitro research, but which glossed over the details (Pharmacodynamics)
- PMID 27499494 – supports only the following sentence in a reference note:
Since all T cells are CD3+, a measure of CD3+ cells is used as a general estimate of total T cells.
(Special:permalink/814463242#cite_note-39) - PMID 23551944 – supports statements about pharmacodynamics & concentration in blood plasma following oral ingestion (Pharmacodynamics, Detection in body fluids)
Seppi333 (Insert 2¢) 00:02, 9 December 2017 (UTC)
COMMENT: Under the rubric of "less is more," I find it unnecessary and annoying that so many of the references include extended quotation of material from the abstracts or articles. Some exceeding 150 words and containing mention of references in the cited article. If the information is essential to the article it belongs in the article. If not, it does not belong anywhere. I've rarely seen reference bloat of this nature, and this is a particularly egregious example. David notMD (talk) 15:45, 12 December 2017 (UTC)
- @David notMD: The extended quotes are there so that I don't need to constantly sift back through the refs during FAC when people challenge whether or not material is supported by a reference, which occurs at every FAC. I intend to censor all of the ref quotes to at most 5 sentences after a WP:V check is finished. I'm not going to censor them now though. Seppi333 (Insert 2¢) 17:57, 12 December 2017 (UTC)
- Appreciate the explanation. Whenever I am trying to uplift an article to GA status, my workspace is strewn with printouts of abstracts and pages from PDFs of articles. I've yet to attempt a FA. NOTE: I do agree with the too-many-refs comment from the GA reviewer, but again, some of that probably in anticipation of FA submittal. David notMD (talk) 18:08, 12 December 2017 (UTC)
Conclusion
editThanks for your patience, Seppi333. This is a great article that you've put a lot of effort into. With your many changes I feel the article has improved to meet GA criteria. I have one or two concerns that I feel we are at loggerheads here with and will pop on the article's talk page, but nothing that would mean this article shouldn't become a GA. Thanks for your responsiveness; Merry Christmas! --Tom (LT) (talk) 22:26, 25 December 2017 (UTC)
- Thanks again for doing the GA review of this article Tom! I really appreciate all the time and effort you put into reviewing it; I think it was very constructive/helpful. Seppi333 (Insert 2¢) 22:30, 25 December 2017 (UTC)