San Francisco station may refer to:
- San Francisco station (Puerto Rico), in San Juan
- San Francisco 4th and King Street station, San Francisco, California
- San Francisco (Madrid Metro), Spain
- San Francisco metro station (Quito), Ecuador
- San Francisco (Mexibús, Line 1), Tecámac, Mexico
- San Francisco (Mexibús, Line 2), Coacalco de Berriozábal, México